PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G113100.1
Common NamePOPTR_0013s11740g, WND6A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 320aa    MW: 36803.8 Da    PI: 6.8865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G113100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.56e-5451331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPt+eelv +yLk+k+++ k++l +vi ++d+y++ePwd+++k+k    e++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+
  Potri.013G113100.1   5 VPPGFRFHPTEEELVGYYLKRKIHSLKIDL-DVIVDIDLYNMEPWDIQAKCKLgydEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGR 94 
                         69****************************.99**************953333333677******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk+vl+ k++l+g++ktLvfykgrap+g+ktdW+mheyrl
  Potri.013G113100.1  95 DKAVLT-KNRLIGMRKTLVFYKGRAPNGRKTDWIMHEYRL 133
                         ******.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-593154IPR003441NAC domain
PROSITE profilePS5100558.0545154IPR003441NAC domain
PfamPF023651.4E-286133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESCVPPGFR FHPTEEELVG YYLKRKIHSL KIDLDVIVDI DLYNMEPWDI QAKCKLGYDE  60
QNEWYFFSHK DRKYPTGTRT NRATAAGFWK ATGRDKAVLT KNRLIGMRKT LVFYKGRAPN  120
GRKTDWIMHE YRLQTSEHGP QQAKGWVVCR AFKKPIPNQR QGFEAWNHAY YVNNINHARP  180
PSFSDTVTTT HTVHPNQSAS FHQPFSSSSD LISHQEFLDN NNRLVELPQL DSPSTLSTSF  240
APKEGNFHQT NEDYDDERSN NSSQYIDWKS LDTLLASQVN DSSTSSFPLQ NFPSITQNYD  300
LAAGQQDHVS HFLDCFPDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-49515417165NAC domain-containing protein 19
4dul_A2e-49515417165NAC domain-containing protein 19
1ut7_B2e-49515417165NO APICAL MERISTEM PROTEIN
1ut7_A2e-49515417165NO APICAL MERISTEM PROTEIN
1ut4_B2e-49515417165NO APICAL MERISTEM PROTEIN
1ut4_A2e-49515417165NO APICAL MERISTEM PROTEIN
3swp_D2e-49515420168NAC domain-containing protein 19
3swp_C2e-49515420168NAC domain-containing protein 19
3swp_B2e-49515420168NAC domain-containing protein 19
3swp_A2e-49515420168NAC domain-containing protein 19
3swm_D2e-49515420168NAC domain-containing protein 19
3swm_C2e-49515420168NAC domain-containing protein 19
3swm_B2e-49515420168NAC domain-containing protein 19
3swm_A2e-49515420168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2158570.0HQ215857.1 Populus trichocarpa wood-associated NAC domain transcription factor 6A (WND6A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376294.10.0no apical meristem family protein
SwissprotQ9C8W91e-124NAC30_ARATH; NAC domain-containing protein 30
TrEMBLB9MW790.0B9MW79_POPTR; No apical meristem family protein
STRINGPOPTR_0013s11740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71383247
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-104vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Zhong R,Lee C,Ye ZH
    Functional characterization of poplar wood-associated NAC domain transcription factors.
    Plant Physiol., 2010. 152(2): p. 1044-55
    [PMID:19965968]